Projects per year
Description
High-quality SARS-CoV-2 consensus genome files with coverage greater than 90% are routinely deposited to the Global Initiative for Sharing of All Influenza Data (GISAID) database (https://gisaid.org/) in their EpiCov database (registration is required to access these data). Files generated by the University of portsmouth, acting as the South Coast Sequencing Hub of the COVID-19 Genomics (COG) UK COnsortium can be found for searching for "PORT-" in the "Virus name" column.
| Date made available | 18 Nov 2020 |
|---|---|
| Publisher | GISAID |
Datasets
-
COVID-19 Genomics UK (COG-UK) consortium
Robson, S. (Creator), NCBI, 29 Apr 2020
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB37886
Dataset
Projects
- 2 Finished
-
HOCI: COG-UK Project Hospital Onset COVID-19 Infections study
Robson, S. (PI), Beckett, A. (Team Member), Cook, K. (Team Member), Goudarzi, S. (Team Member), Fearn, C. (Team Member) & Glaysher, S. (Team Member)
15/10/20 → 31/07/21
Project: Research
-
STOP COVID-19: Sequencing and Tracking Of Phylogeny in COVID-19
Robson, S. (PI), Scarlett, G. (Team Member), Bourgeois, Y. (CoI), Beckett, A. (Team Member), Loveson, K. (Team Member), Glaysher, S. (Team Member), Chauhan, A. (Team Member), Goudarzi, S. (Team Member), Cook, K. (Team Member), Fearn, C. (Team Member), Paul, H. (Team Member) & Dent, H. (Team Member)
UK Health Security Agency, COG-UK
1/04/20 → 31/03/23
Project: Research
-
Management of a large outbreak of COVID-19 at a British Army training centre: lessons for the future
Routledge, M., Lyon, J., Vincent, C., Gordon Clarke, A., Shawcross, K., Turpin, C., Cormack, H., Robson, S. C., Beckett, A., Glaysher, S., Cook, K., Fearn, C., Goudarzi, S., Hutley, E. J. & Ross, D., 22 Nov 2023, In: BMJ Military Health. 169, p. 488-492Research output: Contribution to journal › Article › peer-review
Open AccessFile66 Downloads (Pure) -
Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 infection early in the pandemic and the role of unidentified cases in transmission
COVID-19 Genomics UK (COG-UK) Consortium & Robson, S., 1 Jan 2022, In: Clinical Microbiology and Infection. 28, 1, p. 93-100 8 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile76 Downloads (Pure) -
Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study
Stirrup, O., Blackstone, J., Mapp, F., Macneil, A., Panca, M., Holmes, A., Machin, N., Shin, G. Y., Mahungu, T., Saeed, K., Saluja, T., Taha, Y., Mahida, N., Pope, C., Chawla, A., Cutino-Moguel, M.-T., Tamuri, A., Williams, R., Darby, A. & Robertson, D. L. & 29 others, , 13 Sept 2022, In: eLife. 11, 31 p., e78427.Research output: Contribution to journal › Article › peer-review
Open AccessFile71 Downloads (Pure)
Cite this
- DataSetCite