A geometrical parametrization of C1-C5 RNA ribose chemical shifts calculated by density functional theory

Reynier Suardíaz, Aleksandr B. Sahakyan, Michele Vendruscolo*

*Corresponding author for this work

    Research output: Contribution to journalArticlepeer-review

    Abstract

    It has been recently shown that NMR chemical shifts can be used to determine the structures of proteins. In order to begin to extend this type of approach to nucleic acids, we present an equation that relates the structural parameters and the 13C chemical shifts of the ribose group. The parameters in the equation were determined by maximizing the agreement between the DFT-derived chemical shifts and those predicted through the equation for a database of ribose structures. Our results indicate that this type of approach represents a promising way of establishing quantitative and computationally efficient analytical relationships between chemical shifts and structural parameters in nucleic acids.

    Original languageEnglish
    Article number034101
    JournalJournal of Chemical Physics
    Volume139
    Issue number3
    DOIs
    Publication statusPublished - 15 Jul 2013

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