@article{ac0b1621a6384d61b6bf04c28ea8f603,
title = "A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set",
abstract = "Premise: To further advance the understanding of the species-rich, economically and ecologically important angiosperm order Myrtales in the rosid clade, comprising nine families, approximately 400 genera and almost 14,000 species occurring on all continents (except Antarctica), we tested the Angiosperms353 probe kit. Methods: We combined high-throughput sequencing and target enrichment with the Angiosperms353 probe kit to evaluate a sample of 485 species across 305 genera (76% of all genera in the order). Results: Results provide the most comprehensive phylogenetic hypothesis for the order to date. Relationships at all ranks, such as the relationship of the early-diverging families, often reflect previous studies, but gene conflict is evident, and relationships previously found to be uncertain often remain so. Technical considerations for processing HTS data are also discussed. Conclusions: High-throughput sequencing and the Angiosperms353 probe kit are powerful tools for phylogenomic analysis, but better understanding of the genetic data available is required to identify genes and gene trees that account for likely incomplete lineage sorting and/or hybridization events.",
keywords = "Alzateaceae, Combretaceae, Crypteroniaceae, Lythraceae, Melastomataceae, Myrtaceae, Onagraceae, Penaeaceae, phylogenomics, Vochysiaceae",
author = "Olivier Maurin and Artemis Anest and Sidonie Bellot and Edward Biffin and Grace Brewer and Tristan Charles-Dominique and Cowan, {Robyn S.} and Steven Dodsworth and Niroshini Epitawalage and Berta Gallego and Augusto Giaretta and Renato Goldenberg and Gon{\c c}alves, {Deise J. P.} and Shirley Graham and Peter Hoch and Fiorella Mazine and Low, {Yee Wen} and Catherine McGinnie and Michelangeli, {Fabi{\'a}n A.} and Sarah Morris and Penneys, {Darin S.} and {P{\'e}rez Escobar}, {Oscar Alejandro} and Yohan Pillon and Lisa Pokorny and Gustavo Shimizu and Staggemeier, {Vanessa G.} and Thornhill, {Andrew H.} and Tomlinson, {Kyle W.} and Turner, {Ian M.} and Thais Vasconcelos and Wilson, {Peter G.} and Zuntini, {Alexandre R.} and Baker, {William J.} and F{\'e}lix Forest and Eve Lucas",
note = "Funding Information: We gratefully acknowledge assistance from colleagues at RBGKew: Dion Devey (supporting laboratory work); Imalka Kahandawala and Rosie Woods (DNA Bank); Paul Bailey, Kevin Leempoel, and Eduardo Toledo, (bioinformatics). We are grateful to the editors and anonymous reviewers who have patiently helped improve the content and format of this manuscript. This work was funded by grants from the Calleva Foundation and the Sackler Trust to the Plant and Fungal Trees of Life Project (PAFTOL) at the Royal Botanic Gardens, Kew, with additional funding from the Garfield Weston Foundation. A.A. received support from the 2018 CAS-TWAS President's Fellowship for International Doctoral Students. E.L. and A.G. received support from the Bentham-Moxon Trust providing funds for sequencing Eugenia species and Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico (CNPq - proc. 155480/2018-9). Support from the National Science Foundation is acknowledged (DEB-0515665, DEB-0818399, DEB-1146409, DEB-1343612, DEB-1754667). We also thank the Assembl?e de la Province Nord, Assembl?e de la Province Sud (New Caledonia) for relevant collection permits. F.M. received support from the Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior (CAPES/PriInt) and Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico (CNPq - proc. 302309/2018-7). K.W.T. received support by a joint Natural Science Foundation of China-Yunnan Government research grant (U1502264). Funding Information: This work was funded by grants from the Calleva Foundation and the Sackler Trust to the Plant and Fungal Trees of Life Project (PAFTOL) at the Royal Botanic Gardens, Kew, with additional funding from the Garfield Weston Foundation. A.A. received support from the 2018 CAS‐TWAS President's Fellowship for International Doctoral Students. E.L. and A.G. received support from the Bentham‐Moxon Trust providing funds for sequencing species and Conselho Nacional de Desenvolvimento Cient{\'i}fico e Tecnol{\'o}gico (CNPq ‐ proc. 155480/2018‐9). Support from the National Science Foundation is acknowledged (DEB‐0515665, DEB‐0818399, DEB‐1146409, DEB‐1343612, DEB‐1754667). We also thank the Assembl{\'e}e de la Province Nord, Assembl{\'e}e de la Province Sud (New Caledonia) for relevant collection permits. F.M. received support from the Coordena{\c c}{\~a}o de Aperfei{\c c}oamento de Pessoal de N{\'i}vel Superior (CAPES/PriInt) and Conselho Nacional de Desenvolvimento Cient{\'i}fico e Tecnol{\'o}gico (CNPq ‐ proc. 302309/2018‐7). K.W.T. received support by a joint Natural Science Foundation of China‐Yunnan Government research grant (U1502264). Eugenia Publisher Copyright: {\textcopyright} 2021 The Authors. American Journal of Botany published by Wiley Periodicals LLC on behalf of Botanical Society of America.",
year = "2021",
month = jul,
day = "27",
doi = "10.1002/ajb2.1699",
language = "English",
volume = "108",
pages = "1087--1111",
journal = "American Journal of Botany",
issn = "0002-9122",
publisher = "Botanical Society of America Inc.",
number = "7",
}