An integrated national scale SARS-CoV-2 genomic surveillance network

The COVID-19 Genomics UK (COG-UK) Consortium; Samuel Robson; Garry Scarlett; Yann Xavier Claude Bourgeois; Angela Helen Beckett

doi:10.1016/S2666-5247(20)30054-9

An integrated national scale SARS-CoV-2 genomic surveillance network

The COVID-19 Genomics UK (COG-UK) Consortium, Samuel Robson, Garry Scarlett, Yann Xavier Claude Bourgeois, Angela Helen Beckett

Research output: Contribution to journal › Comment/debate › peer-review

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Abstract

The Coronavirus Disease 2019 (COVID-19) Genomics UK Consortium (COG-UK) was launched in March, 2020, with £20 million support from UK Research and Innovation, the UK Department of Health and Social Care, and Wellcome Trust. The goal of this consortium is to sequence severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) for up to 230 000 patients, health-care workers, and other essential workers in the UK with COVID-19, which will help to enable the tracking of SARS-CoV-2 transmission, identify viral mutations, and integrate with health data to assess how the viral genome interacts with cofactors and consequences of COVID-19.

Original language	English
Pages (from-to)	e99-e100
Journal	The Lancet Microbe
Volume	1
Early online date	2 Jun 2020
DOIs	https://doi.org/10.1016/S2666-5247(20)30054-9
Publication status	Published - 1 Jul 2020

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10.1016/S2666-5247(20)30054-9

Supplementary appendix author listProof, 189 KBLicence: CC BY
An integrated national scaleFinal published version, 44.3 KBLicence: CC BY

https://www.thelancet.com/journals/lanmic/article/PIIS2666-5247(20)30054-9/fulltext

160 Citations
1 Article

Multiple pathways of SARS-CoV-2 nosocomial transmission uncovered by integrated genomic and epidemiological analyses during the second wave of the COVID-19 pandemic in the UK
COG-UK Consortium, Robson, S., Cook, K. F., Glaysher, S., Beckett, A. H., Goudarzi, S., Fearn, C. P. S., Loveson, K. F., Elliott, S., Wyllie, S., Lloyd, A., Bicknell, K., Lumley, S. & Chauhan, A., 20 Jan 2023, In: Frontiers in Cellular and Infection Microbiology. 12, 20 p., 1066390.
Research output: Contribution to journal › Article › peer-review

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COVID-19 Genomics UK (COG-UK) consortium
Robson, S. (Creator), NCBI, 29 Apr 2020
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB37886
Dataset
Dataset: GISAID EpiCov SARS-CoV-2 Whole Genome Sequencing Database
Robson, S. (Creator), GISAID, 2020
https://www.epicov.org/epi3/frontend#3bd481
Dataset

1 Finished

STOP COVID-19: Sequencing and Tracking Of Phylogeny in COVID-19
Robson, S., Scarlett, G., Bourgeois, Y., Beckett, A., Loveson, K., Glaysher, S., Chauhan, A., Goudarzi, S., Cook, K., Fearn, C., Paul, H. & Dent, H.
UK Health Security Agency, COG-UK
1/04/20 → 31/03/23
Project: Research

Cite this

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title = "An integrated national scale SARS-CoV-2 genomic surveillance network",

abstract = "The Coronavirus Disease 2019 (COVID-19) Genomics UK Consortium (COG-UK) was launched in March, 2020, with £20 million support from UK Research and Innovation, the UK Department of Health and Social Care, and Wellcome Trust. The goal of this consortium is to sequence severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) for up to 230 000 patients, health-care workers, and other essential workers in the UK with COVID-19, which will help to enable the tracking of SARS-CoV-2 transmission, identify viral mutations, and integrate with health data to assess how the viral genome interacts with cofactors and consequences of COVID-19.",

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AU - The COVID-19 Genomics UK (COG-UK) Consortium

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AU - Scarlett, Garry

AU - Bourgeois, Yann Xavier Claude

AU - Beckett, Angela Helen

PY - 2020/7/1

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N2 - The Coronavirus Disease 2019 (COVID-19) Genomics UK Consortium (COG-UK) was launched in March, 2020, with £20 million support from UK Research and Innovation, the UK Department of Health and Social Care, and Wellcome Trust. The goal of this consortium is to sequence severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) for up to 230 000 patients, health-care workers, and other essential workers in the UK with COVID-19, which will help to enable the tracking of SARS-CoV-2 transmission, identify viral mutations, and integrate with health data to assess how the viral genome interacts with cofactors and consequences of COVID-19.

AB - The Coronavirus Disease 2019 (COVID-19) Genomics UK Consortium (COG-UK) was launched in March, 2020, with £20 million support from UK Research and Innovation, the UK Department of Health and Social Care, and Wellcome Trust. The goal of this consortium is to sequence severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) for up to 230 000 patients, health-care workers, and other essential workers in the UK with COVID-19, which will help to enable the tracking of SARS-CoV-2 transmission, identify viral mutations, and integrate with health data to assess how the viral genome interacts with cofactors and consequences of COVID-19.

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DO - 10.1016/S2666-5247(20)30054-9

M3 - Comment/debate

SN - 2666-5247

VL - 1

SP - e99-e100

JO - The Lancet Microbe

JF - The Lancet Microbe

ER -

An integrated national scale SARS-CoV-2 genomic surveillance network

Abstract

Access to Document

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Research output

Multiple pathways of SARS-CoV-2 nosocomial transmission uncovered by integrated genomic and epidemiological analyses during the second wave of the COVID-19 pandemic in the UK

Datasets

COVID-19 Genomics UK (COG-UK) consortium

Dataset: GISAID EpiCov SARS-CoV-2 Whole Genome Sequencing Database

Projects

STOP COVID-19: Sequencing and Tracking Of Phylogeny in COVID-19

Cite this