BioTIME: a database of biodiversity time series for the anthropocene

Maria Dornelas; Laura H. Antao; Faye Moyes; Amanda E. Bates; Anne E. Magurran; Dusan Adam; Asem A. Akhmetzhanova; Ward Appeltans; Jose Manuel Arcos; Haley Arnold; Narayanan Ayyappan; Gal Badihi; Andrew H. Baird; Miguel Barbosa; Tiago Egydio Barreto; Claus Bässler; Alecia Bellgrove; Jonathan Belmaker; Lisandro Benedetti-Cecchi; Brian J. Bett; Anne D. Bjorkman; Magdalena Błazewicz; Shane A. Blowes; Christopher P. Bloch; Timothy C. Bonebrake; Susan Boyd; Matt Bradford; Andrew J. Brooks; James H. Brown; Helge Bruelheide; Phaedra Budy; Fernando Carvalho; Edward Castaneda-Moya; Chaolun Allen Chen; John F. Chamblee; Tory J. Chase; Laura Siegwart Collier; Sharon K. Collinge; Richard Condit; Elisabeth J. Cooper; Hans C. Cornelissen; Unai Cotano; Shannan Kyle Crow; Gabriella Damasceno; Claire H. Davies; Robert A. Davis; Frank P. Day; Steven Degraer; Tim S. Doherty; Timothy E. Dunn; Giselda Durigan; Emmett Duffy; Dor Edelist; Graham J. Edgar; Robin Elahi; Sarah C. Elmendorf; Anders Enemar; Morgan Ernest; Ruben Escribano; Marc Estiarte; Brian S. Evans; Tung-Yung Fan; Fabiano Turini Farah; Luiz Loureiro Fernandes; Fabio Z. Farneda; Alessandra Fidelis; Robert Fitt; Anna Maria Fosaa; Geraldo Antonio Daher Correa Franco; Grace E. Frank; William R. Fraser; Hernando García; Roberto Cazzolla Gatt; Or Givan; Elizabeth Gorgone-Barbosa; William A. Gould; Corinna Gries; Gary D. Grossman; Julio R. Gutierrez; Stephen Hale; Mark E. Harmon; John Harte; Gary Haskins; Donald L. Henshaw; Luise Hermanutz; Pamela Hidalgo; Pedro Higuchi; Andrew Hoey; Gert Van Hoey; Annika Hofgaard; Kristen Holeck; Robert D. Hollister; Richard Holmes; Mia Hoogenboom; Chih-hao Hsieh; Stephen P. Hubbell; Falk Huettmann; Christine L. Huffard; Allen H. Hurlbert; Natalia Macedo Ivanauskas; David Janík; Ute Jandt; Anna Jazdzewska; Tore Johannessen; Jill Johnstone; Julia Jones; Faith A. M. Jones; Jungwon Kang; Tasrif Kartawijaya; Erin C. Keeley; Douglas A. Kelt; Rebecca Kinnear; Kari Klanderud; Halvor Knutsen; Christopher C. Koenig; Alessandra R. Kortz; Kamil Kral; Linda A. Kuhnz; Chao-Yang Kuo; David J. Kushner; Claire Laguionie-Marchais; Lesley T. Lancaster; Cheol Min Lee; Jonathan S. Lefcheck; Esther Levesque; David Lightfoot; Francisco Lloret; John D. Lloyd; Adria Lopez-Baucells; Maite Louzao; Joshua S. Madin; Borgpor Magnusson; Shahar Malamud; Iain Matthews; Kent P. McFarland; Brian McGill; Diane McKnight; William O. McLarney; Jason Meador; Peter L. Meserve; Daniel J. Metcalfe; Christoph F. J. Meyer; Anders Michelsen; Nataliya Milchakova; Tom Moens; Even Moland; Jon Moore; Carolina Mathias Moreira; Jorg Muller; Grace Murphy; Isla H. Myers-Smith; Randall W. Myster; Andrew Naumov; Francis Neat; James A. Nelson; Michael Paul Nelson; Stephen F. Newton; Natalia Norden; Jeffrey C. Oliver; Esben M. Olsen; Vladimir G. Onipchenko; Krzysztof Pabis; Robert J. Pabst; Alain Paquette; Sinta Pardede; David M. Paterson; Raphael Pelissier; Josep Penuelas; Alejandro Perez-Matus; Oscar Pizarro; Francesco Pomati; Eric Post; Herbert H. T. Prins; John C. Priscu; Pieter Provoost; Kathleen L. Prudic; Erkki Pulliainen; B. R. Ramesh; Olivia Mendivil Ramos; Andrew Rassweiler; Jose Eduardo Rebelo; Daniel C. Reed; Peter B. Reich; Suzanne M. Remillard; Anthony J. Richardson; Paul Richardson; Itai van Rijn; Ricardo Rocha; Victor H. Rivera-Monroy; Christian Rixen; Kevin P. Robinson; Ricardo Ribeiro Rodrigues; Denise de Cerqueira Rossa-Feres; Lars Rudstam; Henry Ruhl; Catalina S. Ruz; Erica M. Sampaio; Nancy Rybicki; Andrew Rypel; Sofia Sal; Beatriz Salgado; Flavio A. M. Santos; Ana Paula Savassi-Coutinho; Sara Scanga; Jochen Schmidt; Robert Schooley; Fakhrizal Setiawan; Kwang-Tsao Shao; Gaius R. Shaver; Sally Sherman; Thomas W. Sherry; Jacek Sicinski; Caya Sievers; Ana Carolina da Silva; Fernando Rodrigues da Silva; Fabio L. Silveira; Jasper Slingsby; Tracey Smart; Sara J. Snell; Nadejda A. Soudzilovskaia; Gabriel B. G. Souza; Flaviana Maluf Souza; Vinícius Castro Souza; Christopher D. Stallings; Rowan Stanforth; Emily H. Stanley; Jose Mauro Sterza; Maarten Stevens; Rick Stuart-Smith; Yzel Rondon Suarez; Sarah Supp; Jorge Yoshio Tamashiro; Sukmaraharja Tarigan; Gary P. Thiede; Simon Thorn; Anne Tolvanen; Maria Teresa Zugliani Toniato; Ørjan Totland; Robert R. Twilley; Gediminas Vaitkus; Nelson Valdivia; Martha Isabel Vallejo; Thomas J. Valone; Carl Van Colen; Jan Vanaverbeke; Fabio Venturoli; Hans M. Verheye; Marcelo Vianna; Rui P. Vieira; Tomas Vrska; Con Quang Vu; Lien Van Vu; Robert B. Waide; Conor Waldock; Dave Watts; Sara Webb; Tomasz Wesołowski; Ethan P. White; Claire E. Widdicombe; Dustin Wilgers; Richard Williams; Stefan B. Williams; Mark Williamson; Michael R. Willig; Trevor John Willis; Sonja Wipf; Kerry D. Woods; Eric J. Woehler; Kyle Zawada; Michael L. Zettler

doi:10.1111/geb.12729

BioTIME: a database of biodiversity time series for the anthropocene

Maria Dornelas, Laura H. Antao, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dusan Adam, Asem A. Akhmetzhanova, Ward Appeltans, Jose Manuel Arcos, Haley Arnold, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Miguel Barbosa, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-Cecchi, Brian J. BettAnne D. Bjorkman, Magdalena Błazewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castaneda-Moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, Morgan Ernest, Ruben Escribano, Marc Estiarte, Brian S. Evans, Tung-Yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fabio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatt, Or Givan, Elizabeth Gorgone-Barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierrez, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natalia Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jazdzewska, Tore Johannessen, Jill Johnstone, Julia Jones, Faith A. M. Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Kral, Linda A. Kuhnz, Chao-Yang Kuo, David J. Kushner, Claire Laguionie-Marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Levesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adria Lopez-Baucells, Maite Louzao, Joshua S. Madin, Borgpor Magnusson, Shahar Malamud, Iain Matthews, Kent P. McFarland, Brian McGill, Diane McKnight, William O. McLarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jorg Muller, Grace Murphy, Isla H. Myers-Smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David M. Paterson, Raphael Pelissier, Josep Penuelas, Alejandro Perez-Matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Olivia Mendivil Ramos, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, Paul Richardson, Itai van Rijn, Ricardo Rocha, Victor H. Rivera-Monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise de Cerqueira Rossa-Feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-Coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-Tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Sicinski, Caya Sievers, Ana Carolina da Silva, Fernando Rodrigues da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, Jose Mauro Sterza, Maarten Stevens, Rick Stuart-Smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomas Vrska, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor John Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Kyle Zawada, Michael L. Zettler

University of St Andrews

Research output: Contribution to journal › Article › peer-review

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Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the anthropocene.

Main types of variables included: The database contains 8 773 553 species abundance records, from assemblages consistently sampled for a minimum of two, not necessarily consecutive, years. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.

Spatial location and grain: BioTIME is a global database of 547 161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000000 cm2).

Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.

Major taxa and level of measurement: BioTIME includes data from 44 360 species across the plant an animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.

Software format: .csv and .SQL

Original language	English
Pages (from-to)	760-786
Journal	Global Ecology and Biogeography
Volume	27
Issue number	7
Early online date	24 Jul 2018
DOIs	https://doi.org/10.1111/geb.12729
Publication status	Published - Jul 2018

Keywords

RCUK
NERC
NE/L002531/1

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1111/geb.12729

Dornelas_et_al-2018-Global_Ecology_and_BiogeographyFinal published version, 2.31 MBLicence: CC BY

Data availability statement for 'BioTIME: a database of biodiversity time series for the anthropocene'.
Willis, T. J. (Creator), John Wiley & Sons, 24 Jul 2018
http://biotime.st-andrews.ac.uk and one more link, https://zenodo.org/record/1095627 (show fewer)
Dataset: Data Availability Statement

Cite this

Dornelas, M., Antao, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-Cecchi, L., ... Zettler, M. L. (2018). BioTIME: a database of biodiversity time series for the anthropocene. Global Ecology and Biogeography, 27(7), 760-786. https://doi.org/10.1111/geb.12729

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title = "BioTIME: a database of biodiversity time series for the anthropocene",

abstract = "Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the anthropocene.Main types of variables included: The database contains 8 773 553 species abundance records, from assemblages consistently sampled for a minimum of two, not necessarily consecutive, years. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grain: BioTIME is a global database of 547 161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.Major taxa and level of measurement: BioTIME includes data from 44 360 species across the plant an animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL",

keywords = "RCUK, NERC, NE/L002531/1",

author = "Maria Dornelas and Antao, {Laura H.} and Faye Moyes and Bates, {Amanda E.} and Magurran, {Anne E.} and Dusan Adam and Akhmetzhanova, {Asem A.} and Ward Appeltans and Arcos, {Jose Manuel} and Haley Arnold and Narayanan Ayyappan and Gal Badihi and Baird, {Andrew H.} and Miguel Barbosa and Barreto, {Tiago Egydio} and Claus B{\"a}ssler and Alecia Bellgrove and Jonathan Belmaker and Lisandro Benedetti-Cecchi and Bett, {Brian J.} and Bjorkman, {Anne D.} and Magdalena B{\l}azewicz and Blowes, {Shane A.} and Bloch, {Christopher P.} and Bonebrake, {Timothy C.} and Susan Boyd and Matt Bradford and Brooks, {Andrew J.} and Brown, {James H.} and Helge Bruelheide and Phaedra Budy and Fernando Carvalho and Edward Castaneda-Moya and Chen, {Chaolun Allen} and Chamblee, {John F.} and Chase, {Tory J.} and Collier, {Laura Siegwart} and Collinge, {Sharon K.} and Richard Condit and Cooper, {Elisabeth J.} and Cornelissen, {Hans C.} and Unai Cotano and Crow, {Shannan Kyle} and Gabriella Damasceno and Davies, {Claire H.} and Davis, {Robert A.} and Day, {Frank P.} and Steven Degraer and Doherty, {Tim S.} and Dunn, {Timothy E.} and Giselda Durigan and Emmett Duffy and Dor Edelist and Edgar, {Graham J.} and Robin Elahi and Elmendorf, {Sarah C.} and Anders Enemar and Morgan Ernest and Ruben Escribano and Marc Estiarte and Evans, {Brian S.} and Tung-Yung Fan and Farah, {Fabiano Turini} and Fernandes, {Luiz Loureiro} and Farneda, {Fabio Z.} and Alessandra Fidelis and Robert Fitt and Fosaa, {Anna Maria} and Franco, {Geraldo Antonio Daher Correa} and Frank, {Grace E.} and Fraser, {William R.} and Hernando Garc{\'i}a and Gatt, {Roberto Cazzolla} and Or Givan and Elizabeth Gorgone-Barbosa and Gould, {William A.} and Corinna Gries and Grossman, {Gary D.} and Gutierrez, {Julio R.} and Stephen Hale and Harmon, {Mark E.} and John Harte and Gary Haskins and Henshaw, {Donald L.} and Luise Hermanutz and Pamela Hidalgo and Pedro Higuchi and Andrew Hoey and {Van Hoey}, Gert and Annika Hofgaard and Kristen Holeck and Hollister, {Robert D.} and Richard Holmes and Mia Hoogenboom and Chih-hao Hsieh and Hubbell, {Stephen P.} and Falk Huettmann and Huffard, {Christine L.} and Hurlbert, {Allen H.} and Ivanauskas, {Natalia Macedo} and David Jan{\'i}k and Ute Jandt and Anna Jazdzewska and Tore Johannessen and Jill Johnstone and Julia Jones and Jones, {Faith A. M.} and Jungwon Kang and Tasrif Kartawijaya and Keeley, {Erin C.} and Kelt, {Douglas A.} and Rebecca Kinnear and Kari Klanderud and Halvor Knutsen and Koenig, {Christopher C.} and Kortz, {Alessandra R.} and Kamil Kral and Kuhnz, {Linda A.} and Chao-Yang Kuo and Kushner, {David J.} and Claire Laguionie-Marchais and Lancaster, {Lesley T.} and Lee, {Cheol Min} and Lefcheck, {Jonathan S.} and Esther Levesque and David Lightfoot and Francisco Lloret and Lloyd, {John D.} and Adria Lopez-Baucells and Maite Louzao and Madin, {Joshua S.} and Borgpor Magnusson and Shahar Malamud and Iain Matthews and McFarland, {Kent P.} and Brian McGill and Diane McKnight and McLarney, {William O.} and Jason Meador and Meserve, {Peter L.} and Metcalfe, {Daniel J.} and Meyer, {Christoph F. J.} and Anders Michelsen and Nataliya Milchakova and Tom Moens and Even Moland and Jon Moore and Moreira, {Carolina Mathias} and Jorg Muller and Grace Murphy and Myers-Smith, {Isla H.} and Myster, {Randall W.} and Andrew Naumov and Francis Neat and Nelson, {James A.} and Nelson, {Michael Paul} and Newton, {Stephen F.} and Natalia Norden and Oliver, {Jeffrey C.} and Olsen, {Esben M.} and Onipchenko, {Vladimir G.} and Krzysztof Pabis and Pabst, {Robert J.} and Alain Paquette and Sinta Pardede and Paterson, {David M.} and Raphael Pelissier and Josep Penuelas and Alejandro Perez-Matus and Oscar Pizarro and Francesco Pomati and Eric Post and Prins, {Herbert H. T.} and Priscu, {John C.} and Pieter Provoost and Prudic, {Kathleen L.} and Erkki Pulliainen and Ramesh, {B. R.} and Ramos, {Olivia Mendivil} and Andrew Rassweiler and Rebelo, {Jose Eduardo} and Reed, {Daniel C.} and Reich, {Peter B.} and Remillard, {Suzanne M.} and Richardson, {Anthony J.} and Paul Richardson and {van Rijn}, Itai and Ricardo Rocha and Rivera-Monroy, {Victor H.} and Christian Rixen and Robinson, {Kevin P.} and Rodrigues, {Ricardo Ribeiro} and Rossa-Feres, {Denise de Cerqueira} and Lars Rudstam and Henry Ruhl and Ruz, {Catalina S.} and Sampaio, {Erica M.} and Nancy Rybicki and Andrew Rypel and Sofia Sal and Beatriz Salgado and Santos, {Flavio A. M.} and Savassi-Coutinho, {Ana Paula} and Sara Scanga and Jochen Schmidt and Robert Schooley and Fakhrizal Setiawan and Kwang-Tsao Shao and Shaver, {Gaius R.} and Sally Sherman and Sherry, {Thomas W.} and Jacek Sicinski and Caya Sievers and {da Silva}, {Ana Carolina} and {da Silva}, {Fernando Rodrigues} and Silveira, {Fabio L.} and Jasper Slingsby and Tracey Smart and Snell, {Sara J.} and Soudzilovskaia, {Nadejda A.} and Souza, {Gabriel B. G.} and Souza, {Flaviana Maluf} and Souza, {Vin{\'i}cius Castro} and Stallings, {Christopher D.} and Rowan Stanforth and Stanley, {Emily H.} and Sterza, {Jose Mauro} and Maarten Stevens and Rick Stuart-Smith and Suarez, {Yzel Rondon} and Sarah Supp and Tamashiro, {Jorge Yoshio} and Sukmaraharja Tarigan and Thiede, {Gary P.} and Simon Thorn and Anne Tolvanen and Toniato, {Maria Teresa Zugliani} and {\O}rjan Totland and Twilley, {Robert R.} and Gediminas Vaitkus and Nelson Valdivia and Vallejo, {Martha Isabel} and Valone, {Thomas J.} and {Van Colen}, Carl and Jan Vanaverbeke and Fabio Venturoli and Verheye, {Hans M.} and Marcelo Vianna and Vieira, {Rui P.} and Tomas Vrska and Vu, {Con Quang} and {Van Vu}, Lien and Waide, {Robert B.} and Conor Waldock and Dave Watts and Sara Webb and Tomasz Weso{\l}owski and White, {Ethan P.} and Widdicombe, {Claire E.} and Dustin Wilgers and Richard Williams and Williams, {Stefan B.} and Mark Williamson and Willig, {Michael R.} and Willis, {Trevor John} and Sonja Wipf and Woods, {Kerry D.} and Woehler, {Eric J.} and Kyle Zawada and Zettler, {Michael L.}",

note = "Expected DOI - 10.1111/geb.12729 Expected vol/iss/page nos. - 27(7), pp. 760-786",

year = "2018",

month = jul,

doi = "10.1111/geb.12729",

language = "English",

volume = "27",

pages = "760--786",

journal = "Global Ecology and Biogeography",

issn = "1466-822X",

publisher = "Wiley-Blackwell",

number = "7",

}

Dornelas, M, Antao, LH, Moyes, F, Bates, AE, Magurran, AE, Adam, D, Akhmetzhanova, AA, Appeltans, W, Arcos, JM, Arnold, H, Ayyappan, N, Badihi, G, Baird, AH, Barbosa, M, Barreto, TE, Bässler, C, Bellgrove, A, Belmaker, J, Benedetti-Cecchi, L, Bett, BJ, Bjorkman, AD, Błazewicz, M, Blowes, SA, Bloch, CP, Bonebrake, TC, Boyd, S, Bradford, M, Brooks, AJ, Brown, JH, Bruelheide, H, Budy, P, Carvalho, F, Castaneda-Moya, E, Chen, CA, Chamblee, JF, Chase, TJ, Collier, LS, Collinge, SK, Condit, R, Cooper, EJ, Cornelissen, HC, Cotano, U, Crow, SK, Damasceno, G, Davies, CH, Davis, RA, Day, FP, Degraer, S, Doherty, TS, Dunn, TE, Durigan, G, Duffy, E, Edelist, D, Edgar, GJ, Elahi, R, Elmendorf, SC, Enemar, A, Ernest, M, Escribano, R, Estiarte, M, Evans, BS, Fan, T-Y, Farah, FT, Fernandes, LL, Farneda, FZ, Fidelis, A, Fitt, R, Fosaa, AM, Franco, GADC, Frank, GE, Fraser, WR, García, H, Gatt, RC, Givan, O, Gorgone-Barbosa, E, Gould, WA, Gries, C, Grossman, GD, Gutierrez, JR, Hale, S, Harmon, ME, Harte, J, Haskins, G, Henshaw, DL, Hermanutz, L, Hidalgo, P, Higuchi, P, Hoey, A, Van Hoey, G, Hofgaard, A, Holeck, K, Hollister, RD, Holmes, R, Hoogenboom, M, Hsieh, C, Hubbell, SP, Huettmann, F, Huffard, CL, Hurlbert, AH, Ivanauskas, NM, Janík, D, Jandt, U, Jazdzewska, A, Johannessen, T, Johnstone, J, Jones, J, Jones, FAM, Kang, J, Kartawijaya, T, Keeley, EC, Kelt, DA, Kinnear, R, Klanderud, K, Knutsen, H, Koenig, CC, Kortz, AR, Kral, K, Kuhnz, LA, Kuo, C-Y, Kushner, DJ, Laguionie-Marchais, C, Lancaster, LT, Lee, CM, Lefcheck, JS, Levesque, E, Lightfoot, D, Lloret, F, Lloyd, JD, Lopez-Baucells, A, Louzao, M, Madin, JS, Magnusson, B, Malamud, S, Matthews, I, McFarland, KP, McGill, B, McKnight, D, McLarney, WO, Meador, J, Meserve, PL, Metcalfe, DJ, Meyer, CFJ, Michelsen, A, Milchakova, N, Moens, T, Moland, E, Moore, J, Moreira, CM, Muller, J, Murphy, G, Myers-Smith, IH, Myster, RW, Naumov, A, Neat, F, Nelson, JA, Nelson, MP, Newton, SF, Norden, N, Oliver, JC, Olsen, EM, Onipchenko, VG, Pabis, K, Pabst, RJ, Paquette, A, Pardede, S, Paterson, DM, Pelissier, R, Penuelas, J, Perez-Matus, A, Pizarro, O, Pomati, F, Post, E, Prins, HHT, Priscu, JC, Provoost, P, Prudic, KL, Pulliainen, E, Ramesh, BR, Ramos, OM, Rassweiler, A, Rebelo, JE, Reed, DC, Reich, PB, Remillard, SM, Richardson, AJ, Richardson, P, van Rijn, I, Rocha, R, Rivera-Monroy, VH, Rixen, C, Robinson, KP, Rodrigues, RR, Rossa-Feres, DDC, Rudstam, L, Ruhl, H, Ruz, CS, Sampaio, EM, Rybicki, N, Rypel, A, Sal, S, Salgado, B, Santos, FAM, Savassi-Coutinho, AP, Scanga, S, Schmidt, J, Schooley, R, Setiawan, F, Shao, K-T, Shaver, GR, Sherman, S, Sherry, TW, Sicinski, J, Sievers, C, da Silva, AC, da Silva, FR, Silveira, FL, Slingsby, J, Smart, T, Snell, SJ, Soudzilovskaia, NA, Souza, GBG, Souza, FM, Souza, VC, Stallings, CD, Stanforth, R, Stanley, EH, Sterza, JM, Stevens, M, Stuart-Smith, R, Suarez, YR, Supp, S, Tamashiro, JY, Tarigan, S, Thiede, GP, Thorn, S, Tolvanen, A, Toniato, MTZ, Totland, Ø, Twilley, RR, Vaitkus, G, Valdivia, N, Vallejo, MI, Valone, TJ, Van Colen, C, Vanaverbeke, J, Venturoli, F, Verheye, HM, Vianna, M, Vieira, RP, Vrska, T, Vu, CQ, Van Vu, L, Waide, RB, Waldock, C, Watts, D, Webb, S, Wesołowski, T, White, EP, Widdicombe, CE, Wilgers, D, Williams, R, Williams, SB, Williamson, M, Willig, MR, Willis, TJ, Wipf, S, Woods, KD, Woehler, EJ, Zawada, K & Zettler, ML 2018, 'BioTIME: a database of biodiversity time series for the anthropocene', Global Ecology and Biogeography, vol. 27, no. 7, pp. 760-786. https://doi.org/10.1111/geb.12729

TY - JOUR

T1 - BioTIME: a database of biodiversity time series for the anthropocene

AU - Dornelas, Maria

AU - Antao, Laura H.

AU - Moyes, Faye

AU - Bates, Amanda E.

AU - Magurran, Anne E.

AU - Adam, Dusan

AU - Akhmetzhanova, Asem A.

AU - Appeltans, Ward

AU - Arcos, Jose Manuel

AU - Arnold, Haley

AU - Ayyappan, Narayanan

AU - Badihi, Gal

AU - Baird, Andrew H.

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N1 - Expected DOI - 10.1111/geb.12729 Expected vol/iss/page nos. - 27(7), pp. 760-786

PY - 2018/7

Y1 - 2018/7

N2 - Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the anthropocene.Main types of variables included: The database contains 8 773 553 species abundance records, from assemblages consistently sampled for a minimum of two, not necessarily consecutive, years. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grain: BioTIME is a global database of 547 161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.Major taxa and level of measurement: BioTIME includes data from 44 360 species across the plant an animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL

AB - Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the anthropocene.Main types of variables included: The database contains 8 773 553 species abundance records, from assemblages consistently sampled for a minimum of two, not necessarily consecutive, years. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grain: BioTIME is a global database of 547 161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.Major taxa and level of measurement: BioTIME includes data from 44 360 species across the plant an animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL

KW - RCUK

KW - NERC

KW - NE/L002531/1

U2 - 10.1111/geb.12729

DO - 10.1111/geb.12729

M3 - Article

SN - 1466-822X

VL - 27

SP - 760

EP - 786

JO - Global Ecology and Biogeography

JF - Global Ecology and Biogeography

IS - 7

ER -

BioTIME: a database of biodiversity time series for the anthropocene

Abstract

Keywords

UN SDGs

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