CoNtRol: an open source framework for the analysis of chemical reaction networks

Pete Donnell; Murad Banaji; Anca Marginean; Casian Pantea

doi:10.1093/bioinformatics/btu063

CoNtRol: an open source framework for the analysis of chemical reaction networks

Pete Donnell, Murad Banaji, Anca Marginean, Casian Pantea

School of Mathematics & Physics

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Abstract

We introduce CoNtRol, a web-based framework for analysis of chemical reaction networks (CRNs). It is designed to be both extensible and simple to use, complementing existing CRN-related tools. CoNtRol currently implements a number of necessary and/or sufficient structural tests for multiple equilibria, stable periodic orbits, convergence to equilibria and persistence, with the potential for incorporation of further tests.

AVAILABILITY AND IMPLEMENTATION: Reference implementation: reaction-networks.net/control/. Source code and binaries, released under the GPLv3: reaction-networks.net/control/download/. Documentation: reaction-networks.net/wiki/CoNtRol.

Original language	English
Pages (from-to)	1633-1634
Journal	Bioinformatics
Volume	30
Issue number	11
Early online date	30 Jan 2014
DOIs	https://doi.org/10.1093/bioinformatics/btu063
Publication status	Published - 1 Jun 2014

Keywords

chemical reaction networks

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10.1093/bioinformatics/btu063

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This is a pre-copyedited, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The version of record CoNtRol: an open source framework for the analysis of chemical reaction networks, Donnell, P., Banaji, M., Marginean, A. & Pantea, C. 1 Jun 2014 In : Bioinformatics. 30, 11, p. 1633-1634 is available online at: http://bioinformatics.oxfordjournals.org/content/30/11/1633
Accepted author manuscript (Post-print), 216 KB

Cite this

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title = "CoNtRol: an open source framework for the analysis of chemical reaction networks",

abstract = "We introduce CoNtRol, a web-based framework for analysis of chemical reaction networks (CRNs). It is designed to be both extensible and simple to use, complementing existing CRN-related tools. CoNtRol currently implements a number of necessary and/or sufficient structural tests for multiple equilibria, stable periodic orbits, convergence to equilibria and persistence, with the potential for incorporation of further tests.AVAILABILITY AND IMPLEMENTATION: Reference implementation: reaction-networks.net/control/. Source code and binaries, released under the GPLv3: reaction-networks.net/control/download/. Documentation: reaction-networks.net/wiki/CoNtRol.",

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AU - Pantea, Casian

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AB - We introduce CoNtRol, a web-based framework for analysis of chemical reaction networks (CRNs). It is designed to be both extensible and simple to use, complementing existing CRN-related tools. CoNtRol currently implements a number of necessary and/or sufficient structural tests for multiple equilibria, stable periodic orbits, convergence to equilibria and persistence, with the potential for incorporation of further tests.AVAILABILITY AND IMPLEMENTATION: Reference implementation: reaction-networks.net/control/. Source code and binaries, released under the GPLv3: reaction-networks.net/control/download/. Documentation: reaction-networks.net/wiki/CoNtRol.

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CoNtRol: an open source framework for the analysis of chemical reaction networks

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Keywords

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