Potential of herbariomics for studying repetitive DNA in angiosperms

Steven Dodsworth*, Maïté S. Guignard, Maarten J. M. Christenhusz, Robyn S. Cowan, Sandra Knapp, Olivier Maurin, Monika Struebig, Andrew R. Leitch, Mark W. Chase, Félix Forest

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

2 Downloads (Pure)

Abstract

Repetitive DNA has an important role in angiosperm genomes and is relevant to our understanding of genome size variation, polyploidisation and genome dynamics more broadly. Much recent work has harnessed the power of high-throughput sequencing (HTS) technologies to advance the study of repetitive DNA in flowering plants. Herbarium collections provide a useful historical perspective on genome diversity through time, but their value for the study of repetitive DNA has not yet been explored. We propose that herbarium DNA may prove as useful for studies of repetitive DNA content as it has for reconstructed organellar genomes and low-copy nuclear sequence data. Here we present a case study in the tobacco genus (Nicotiana; Solanaceae), showing that herbarium specimens can provide accurate estimates of the repetitive content of angiosperm genomes by direct comparison with recently-collected material. We show a strong correlation between the abundance of repeat clusters, e.g., different types of transposable elements and satellite DNA, in herbarium collections versus recent material for four sets of Nicotiana taxa. These results suggest that herbarium specimen genome sequencing (herbariomics) holds promise for both repeat discovery and analyses that aim to investigate the role of repetitive DNAs in genomic evolution, particularly genome size evolution and/or contributions of repeats to the regulation of gene space.

Original languageEnglish
Article number174
Number of pages8
JournalFrontiers in Ecology and Evolution
Volume6
Issue numberOCT
DOIs
Publication statusPublished - 29 Oct 2018

Keywords

  • angiosperms
  • genomics
  • herbariomics
  • herbarium specimen
  • high-throughput sequencing
  • repetitive DNA
  • Solanaceae
  • UKRI
  • NERC

Fingerprint

Dive into the research topics of 'Potential of herbariomics for studying repetitive DNA in angiosperms'. Together they form a unique fingerprint.

Cite this