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Supplementary data for 'Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells'.

Dataset

  • Samudyata (Creator)
  • Paulo P. Amaral (Creator)
  • Pär G. Engström (Creator)
  • Dr Samuel Robson (Creator)
  • Michael L. Nielsen (Creator)
  • Tony Kouzarides (Creator)
  • Gonçalo Castelo-Branco (Creator)

Description

This copy of the Supplementary Material is subject to the same licence (CC BY-NC-ND) and embargo as the post-print and will be available here from 09/05/20.

Xlsx sheet - Tables 1-9, Primers:
Table 1: Genes differentially expressed between bioSox2 and control J1 mES cell lines
Table 2: List of Sox2 interactors in the nucleoplasm
Table 3: List of Sox2 interactors in the chromatin
Table 4. Sox2-interacting transcripts detected by RIP-seq
Table 5: Robust peaks represented in both replicates of odd and even 7SK ChIRP datasets
Table 6: Robust peaks represented in odd and even 7SK ChIRP datasets for replicate 1
Table 7: Robust peaks represented in odd and even 7SK ChIRP datasets for replicate 2
Table 8: Genes common to the 7SK ChIRP datasets (our study and Flynn's ) and Sox2 ChIP dataset (Whyte)
Table 9: Overlap in interactors between our study and other previously published Sox2 interactome studies
Primers: qPCR primers, ChIRP probes

Buffers used (word.doc)

Supplementary Figure 1 (pdf)
Date made available9 May 2019
PublisherElsevier BV

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ID: 14552768