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Dr Yann Bourgeois

Lecturer

  1. 2020
  2. Early online

    Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations

    Dr Yann Xavier Claude Bourgeois, Robert Ruggiero, Imtiyaz Hariyani & Stéphane Boissinot, 5 Oct 2020, In : PLoS Genetics. 16, 10, 32 p., e1009082.

    Research output: Contribution to journalArticlepeer-review

  3. Published
  4. Published
  5. Published

    Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom

    The COVID-19 Genomics UK (COG-UK) consortium, Joseph G. Chappell, Theocharis Tsoleridis, Gemma Clark, Louise Berry, Nadine Holmes, Christopher Moore, Matthew Carlile, Fei Sang, Johnny Debebe & 20 others, Victoria Wright, William L. Irving, Brian J. Thomson, Timothy C.J. Boswell, Iona Willingham, Amelia Joseph, Wendy Smith, Manjinder Khakh, Vicki M. Fleming, Michelle M. Lister, Hannah C. Howson-Wells, Edward C. Holmes, Matthew Loose, Jonathan K. Ball, C. Patrick McClure, Dr Samuel Robson, Dr Garry Scarlett, Dr Yann Xavier Claude Bourgeois, Miss Angela Helen Beckett & Katie Loveson, 21 Aug 2020, medRxiv.

    Research output: Working paper

  6. Published

    An integrated national scale SARS-CoV-2 genomic surveillance network

    The COVID-19 Genomics UK (COG-UK) consortium, Dr Samuel Robson, Dr Garry Scarlett, Dr Yann Xavier Claude Bourgeois & Miss Angela Helen Beckett, 1 Jul 2020, In : The Lancet Microbe. 1, p. e99-e100

    Research output: Contribution to journalComment/debatepeer-review

  7. Published

    CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing

    The COVID-19 Genomics UK (COG-UK) consortium, Dr Samuel Robson, Dr Garry Scarlett, Dr Yann Xavier Claude Bourgeois, Miss Angela Helen Beckett & Katie Loveson, 24 Jun 2020, bioRxiv.

    Research output: Working paper

  8. Published

    A two-locus system with strong epistasis underlies rapid parasite-mediated evolution of host resistance

    Camille Ameline, Dr Yann Xavier Claude Bourgeois, Felix Vögtli, Eevi Savola, Jason Andras, Jan Engelstädter & Dieter Ebert, 12 Jun 2020, bioRxiv.

    Research output: Working paper

  9. Published
  10. Published

    Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations

    Dr Yann Xavier Claude Bourgeois, Robert P. Ruggiero, Imtiyaz Hariyani & Stéphane Boissinot, 14 Apr 2020, bioRxiv.

    Research output: Working paper

  11. Early online

    Differential divergence in autosomes and sex chromosomes is associated with intra‐island diversification at a very small spatial scale in a songbird lineage

    Dr Yann Xavier Claude Bourgeois, Joris a M Bertrand, Boris Delahaie, Hélène Holota, Christophe Thébaud & Borja Milá, 27 Feb 2020, In : Molecular Ecology.

    Research output: Contribution to journalArticlepeer-review

  12. 2019
  13. Published

    Selection at behavioural, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer

    Dr Yann Xavier Claude Bourgeois & Stéphane Boissinot, 1 Aug 2019, In : Molecular Ecology. 28, 15, p. 3523-3543 21 p.

    Research output: Contribution to journalArticlepeer-review

  14. Published

    Recent secondary contacts, linked selection, and variable recombination rates shape genomic diversity in the model species Anolis carolinensis

    Dr Yann Xavier Claude Bourgeois, Robert P. Ruggiero, Joseph D. Manthey & Stéphane Boissinot, 1 Jul 2019, In : Genome Biology and Evolution. 11, 7, p. 2009-2022 14 p.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    On the population dynamics of junk: a review on the population genomics of transposable elements

    Dr Yann Xavier Claude Bourgeois & Stéphane Boissinot, 30 May 2019, In : Genes. 10, 6, 23 p.

    Research output: Contribution to journalReview articlepeer-review

  16. Published

    The mobilome of reptiles: evolution, structure, and function

    Stéphane Boissinot, Dr Yann Xavier Claude Bourgeois, Joseph D. Manthey & Robert P. Ruggiero, 9 Feb 2019, In : Cytogenetic and Genome Research. 157, 1-2, p. 21-33 13 p.

    Research output: Contribution to journalLiterature reviewpeer-review

  17. 2018
  18. Published

    Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

    Dr Yann Xavier Claude Bourgeois, Christoph Stritt, Jean-Claude Walser, Sean P. Gordon, John P. Vogel & Anne C. Roulin, 1 Oct 2018, In : The Plant Journal. 96, 2, p. 438-451 14 p.

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Contrasted patterns of divergence and gene flow among five fish species in a Mongolian rift lake following glaciation

    Ivana Roman, Dr Yann Xavier Claude Bourgeois, Jacobo Reyes-Velasco, Olaf P. Jensen, John Waldman & Stephane Boissinot, 1 Sep 2018, In : Biological Journal of the Linnean Society. 125, 1, p. 115-125 11 p.

    Research output: Contribution to journalArticlepeer-review

  20. Published

    The end of a 60-year riddle: identification and genomic characterization of an iridovirus, the causative agent of white fat cell disease in zooplankton

    Elena R. Toenshoff, Peter D. Fields, Dr Yann Xavier Claude Bourgeois & Dieter Ebert, 28 Mar 2018, In : G3: Genes, Genomes, Genetics. 8, 4, p. 1259-1272 14 p.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data

    Jacobo Reyes-Velasco, Joseph D. Manthey, Dr Yann Xavier Claude Bourgeois, Xenia Freilich & Stéphane Boissinot, 1 Feb 2018, In : PLoS One. 13, 2, 23 p., e0190440.

    Research output: Contribution to journalArticlepeer-review

  22. 2017
  23. Published

    Narrow hybrid zones in spite of very low population differentiation in neutral markers in an island bird species complex

    B. Delahaie, J. Cornuault, C. Masson, J. A. M. Bertrand, Dr Yann Xavier Claude Bourgeois, B. Milá & C. Thébaud, 1 Dec 2017, In : Journal of Evolutionary Biology. 30, 12, p. 2132-2145 14 p.

    Research output: Contribution to journalArticlepeer-review

  24. Published

    LINE insertion polymorphisms are abundant but at low frequencies across populations of Anolis carolinensis

    Robert P. Ruggiero, Dr Yann Xavier Claude Bourgeois & Stephane Boissinot, 13 Apr 2017, In : Frontiers in Genetics. 8, p. 1-14 14 p., 44.

    Research output: Contribution to journalArticlepeer-review

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